Description

Combine multiple GRMs listed in an MGRM manifest into a single dense GRM

Input

name:type
description
pattern

meta

:map

Groovy map containing combined GRM metadata e.g. [ id:'plink_simulated' ]

mgrm_file

:file

MGRM manifest listing the GRM prefixes to combine

*.mgrm

grm_files

:file

GRM sidecar files referenced by mgrm_file

*

Output

name:type
description
pattern

combined_grm

meta

:map

Groovy map containing combined GRM metadata e.g. [ id:'plink_simulated' ]

*.grm.*

:file

Combined dense GRM sidecar files

*.grm.{id,bin,N.bin}

versions_gcta

${task.process}

:string

The process the version was collected from

gcta

:string

The tool name

gcta --version | sed -En 's/^[*] version v([0-9.]*).*/\1/p'

:eval

The command used to retrieve the GCTA version

Topics

name:type
description
pattern

versions

${task.process}

:string

The process the version was collected from

gcta

:string

The tool name

gcta --version | sed -En 's/^[*] version v([0-9.]*).*/\1/p'

:eval

The command used to retrieve the GCTA version

Tools

gcta
GPL-3.0-only

Genome-wide Complex Trait Analysis (GCTA) estimates genetic relationships, variance components, and association statistics from genome-wide data.

yanglab.westlake.edu.cn/software/gcta yanglab.westlake.edu.cn/software/gcta/static/gcta_doc_latest.pdf https://yanglab.westlake.edu.cn/software/gcta/
included in
gwas
maintainer
Github user lyh970817
get in touch
Ask a question on Slack Open an issue on GitHub