Adjust a dense GRM for incomplete tagging using gcta --grm-adj
Input
name:type
description
pattern
meta
:map
Groovy map containing dense GRM metadata.
meta.id is the required GRM basename consumed by --grm and must match
the staged dense GRM files.
e.g. [ id:'tiny_dense' ] requires
tiny_dense.grm.id, tiny_dense.grm.bin, and tiny_dense.grm.N.bin.
grm_files
:file
Dense GRM file bundle with basename ${meta.id}
*.grm.*
grm_adj
:integer
Required GRM adjustment value passed to --grm-adj.
Output
name:type
description
pattern
grm_files
meta
:map
Groovy map containing dense GRM metadata.
meta.id remains the dense-GRM basename contract used for --grm.
*_adj.grm.*
:file
Adjusted GRM file bundle
*_adj.grm.*
versions_gcta
${task.process}
:string
The process the version was collected from
gcta
:string
The tool name
gcta --version | sed -En 's/^[*] version v([0-9.]*).*/\1/p'
:eval
The command used to retrieve the GCTA version
Topics
name:type
description
pattern
versions
${task.process}
:string
The process the version was collected from
gcta
:string
The tool name
gcta --version | sed -En 's/^[*] version v([0-9.]*).*/\1/p'
:eval
The command used to retrieve the GCTA version
Tools
gcta
GPL-3.0-only
Genome-wide Complex Trait Analysis (GCTA) estimates genetic relationships, variance components, and association statistics from genome-wide data.
